Multiscale 3D Granuloma Simulations

Multiscale 3D Granuloma Simulations
[ Multiscale 3D Granuloma Simulations Homepage | Kirschner Lab Time-Lapse Simulations Homepage ]

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Movie 4: Visualizing the agents through a single z-slice of the 3D simulated data

The 2D mesh xy-slice of the TNF gradient at z=50, rotated as though viewed from above, and drawing from the entire 100x100 xy-grid. All agents with a z-value of 50 are shown, including resting macrophages. Macrophages (green -- resting, orange -- infected, red -- chronically infected, blue -- activated), T cells (yellow-orange -- Tgam, maroon -- Tcyt, cyan -- Treg), extracellular Mtb (not shown), necrosis/caseum (not shown). The movie is over time, and corresponds to days 0 to 40 in the simulation.

To play the movie, click on the graphic image above

Right click or CTRL-click on MP4 icon,
select "Save Link As" or "Save Target As"
to download the archived MP4 movie file version of
Movie 4.

To extract the MP4 movie from the archive, download the archive
to your Mac or Windows desktop, double-click on them, and follow the
on-screen instructions.

To extract on Linux, Unix, BSD, etc... use the command in a shell
'unzip (filename.zip)' or a desktop extraction utility.

Movie 1	Movie 2
Visualizing z-slices of the three different simulated chemical gradients over time	Visualizing the simulated Tumor necrosis factor (TNF) chemical gradient at day 50 through slices and surfaces
Movie 3	Movie 4
Visualizing the agents in 3D	Visualizing the agents through a single z-slice of the 3D simulated data

[ Multiscale 3D Granuloma Simulations Homepage | Kirschner Lab Time-Lapse Simulations Homepage ]